PDB: 34 件ウェブページステータス検索Chemie searchBIRD

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1M7L	Solution Structure of the Coiled-Coil Trimerization Domain from Lung Surfactant Protein D 分子名称: Pulmonary surfactant-associated protein D 著者 Kovacs, H, O'Donoghue, S.I, Hoppe, H.-J, Comfort, D, Reid, K.B.M, Campbell, I.D, Nilges, M. 登録日 2002-07-22 公開日 2002-11-27 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Solution structure of the coiled-coil trimerization domain from lung surfactant protein D J.BIOMOL.NMR, 24, 2002
2GGU	crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with maltotriose 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose 著者 Head, J.F. 登録日 2006-03-24 公開日 2006-05-02 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Contributions of Phenylalanine 335 to Ligand Recognition by Human Surfactant Protein D: ring interactions with Sp-D ligands J.Biol.Chem., 281, 2006
1B08	LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT) 分子名称: CALCIUM ION, PROTEIN (LUNG SURFACTANT PROTEIN D) 著者 Hakansson, K, Lim, N.K, Hoppe, H.-J, Reid, K.B.M. 登録日 1998-11-18 公開日 1999-12-01 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of the trimeric alpha-helical coiled-coil and the three lectin domains of human lung surfactant protein D. Structure Fold.Des., 7, 1999
2GGX	Crystal structure of the trimer neck and carbohydrate recognition domain of human surfactant protein D in complex with p-nitrophenyl maltoside 分子名称: 4-NITROPHENYL 4-O-ALPHA-D-GLUCOPYRANOSYL-ALPHA-D-GALACTOPYRANOSIDE, CALCIUM ION, Pulmonary surfactant-associated protein D 著者 Head, J. 登録日 2006-03-24 公開日 2006-05-02 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Contributions of Phenylalanine 335 to Ligand Recognition by Human Surfactant Protein D: ring interactions with Sp-D ligands J.Biol.Chem., 281, 2006
5OXS	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid 著者 Shrive, A.K, Greenhough, T.J. 登録日 2017-09-07 公開日 2018-06-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide 分子名称: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D 著者 Shrive, A.K, Greenhough, T.J. 登録日 2017-09-07 公開日 2018-06-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
4M18	Crystal Structure of Surfactant Protein-D D325A/R343V mutant in complex with trimannose (Man-a1,2Man-a1,2Man) 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose, ... 著者 Goh, B.C, Rynkiewicz, M.J, Cafarella, T.R, White, M.R, Hartshorn, K.L, Allen, K, Crouch, E.C, Calin, O, Seeberger, P.H, Schulten, K, Seaton, B.A. 登録日 2013-08-02 公開日 2013-12-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.203 Å) 主引用文献 Molecular mechanisms of inhibition of influenza by surfactant protein d revealed by large-scale molecular dynamics simulation. Biochemistry, 52, 2013
4M17	Crystal Structure of Surfactant Protein-D D325A/R343V mutant 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D 著者 Goh, B.C, Rynkiewicz, M.J, Cafarella, T.R, White, M.R, Hartshorn, K.L, Allen, K, Crouch, E.C, Calin, O, Seeberger, P.H, Schulten, K, Seaton, B.A. 登録日 2013-08-02 公開日 2013-12-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.096 Å) 主引用文献 Molecular mechanisms of inhibition of influenza by surfactant protein d revealed by large-scale molecular dynamics simulation. Biochemistry, 52, 2013
1PWB	High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D with maltose 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose, ... 著者 Shrive, A.K, Tharia, H.A, Strong, P, Kishore, U, Burns, I, Rizkallah, P.J, Reid, K.B, Greenhough, T.J. 登録日 2003-07-01 公開日 2003-08-05 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 High-resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D J.Mol.Biol., 331, 2003
1PW9	High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D 著者 Shrive, A.K, Tharia, H.A, Strong, P, Kishore, U, Burns, I, Rizkallah, P.J, Reid, K.B, Greenhough, T.J. 登録日 2003-07-01 公開日 2003-08-05 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D J.Mol.Biol., 331, 2003
6BBD	Structure of N-glycosylated porcine surfactant protein-D complexed with glycerol 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ... 著者 van Eijk, M, Rynkiewicz, M.J, Khatri, K, Leymarie, N, Zaia, J, White, M.R, Hartshorn, K.L, Cafarella, T.R, van Die, I, Hessing, M, Seaton, B.A, Haagsman, H.P. 登録日 2017-10-18 公開日 2018-05-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.898 Å) 主引用文献 Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus. J. Biol. Chem., 293, 2018
6BBE	Structure of N-glycosylated porcine surfactant protein-D 分子名称: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 van Eijk, M, Rynkiewicz, M.J, Khatri, K, Leymarie, N, Zaia, J, White, M.R, Hartshorn, K.L, Cafarella, T.R, van Die, I, Hessing, M, Seaton, B.A, Haagsman, H.P. 登録日 2017-10-18 公開日 2018-05-23 最終更新日 2021-03-24 実験手法 X-RAY DIFFRACTION (1.898 Å) 主引用文献 Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus. J. Biol. Chem., 293, 2018
4DN8	Structure of porcine surfactant protein D neck and carbohydrate recognition domain complexed with mannose 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, beta-D-mannopyranose 著者 van Eijk, M, Rynkiewicz, M.J, White, M.R, Hartshorn, K.L, Zou, X, Schulten, K, Luo, D, Crouch, E.C, Cafarella, T.M, Head, J.F, Haagsman, H.P, Seaton, B.A. 登録日 2012-02-08 公開日 2012-06-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D. J.Biol.Chem., 287, 2012
4E52	Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D 分子名称: 4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid-(5-1)-L-glycero-alpha-D-manno-heptopyranose, CALCIUM ION, Pulmonary surfactant-associated protein D 著者 Shrive, A.K, Greenhough, T.J. 登録日 2012-03-13 公開日 2013-03-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains. Infect.Immun., 84, 2016
6RYG	native structure of conglutinin carbohydrate recognition domain 分子名称: CALCIUM ION, Conglutinin 著者 Shrive, A.K, Greenhough, T.J. 登録日 2019-06-10 公開日 2019-10-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (0.974 Å) 主引用文献 Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine. J.Biol.Chem., 294, 2019
6RYM	Structure of carbohydrate recognition domain with GlcNAc bound 分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Shrive, A.K, Greenhough, T.J. 登録日 2019-06-10 公開日 2019-10-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine. J.Biol.Chem., 294, 2019
6RYN	Structure of conglutinin carbohydrate recognition domain with GlcNAc-alpha-1-phosphate bound 分子名称: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, CALCIUM ION, Conglutinin 著者 Shrive, A.K, Greenhough, T.J. 登録日 2019-06-10 公開日 2019-10-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine. J.Biol.Chem., 294, 2019
3IKP	Crystal structure of inositol phosphate bound trimeric human lung surfactant protein D 分子名称: CALCIUM ION, D-MYO-INOSITOL-1-PHOSPHATE, Pulmonary surfactant-associated protein D 著者 Shrive, A.K, Greenhough, T.J. 登録日 2009-08-06 公開日 2009-11-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
3IKN	Crystal structure of galactose bound trimeric human lung surfactant protein D 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, beta-D-galactopyranose 著者 Shrive, A.K, Greenhough, T.J. 登録日 2009-08-06 公開日 2009-11-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
6RYJ	structure of conglutinin carbohydrate recognition domain with ethylene glycol bound 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Conglutinin 著者 Shrive, A.K, Greenhough, T.J. 登録日 2019-06-10 公開日 2019-10-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine. J.Biol.Chem., 294, 2019
3IKR	Crystal structure of alpha 1-4 mannobiose bound trimeric human lung surfactant protein D 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose 著者 Shrive, A.K, Greenhough, T.J. 登録日 2009-08-06 公開日 2009-11-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
3IKQ	Crystal structure of alpha 1-2 mannobiose bound trimeric human lung surfactant protein D 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose 著者 Shrive, A.K, Greenhough, T.J. 登録日 2009-08-06 公開日 2009-11-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
3DBZ	human surfactant protein D 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Pulmonary surfactant-associated protein D 著者 Head, J.F. 登録日 2008-06-02 公開日 2008-08-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Interaction of recombinant surfactant protein D with lipopolysaccharide: conformation and orientation of bound protein by IRRAS and simulations. Biochemistry, 47, 2008
3G83	Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with alpha 1,2 dimannose. 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose 著者 Head, J.F. 登録日 2009-02-11 公開日 2009-03-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Recognition of mannosylated ligands and influenza A virus by human surfactant protein D: contributions of an extended site and residue 343. Biochemistry, 48, 2009
3G84	Crystal structure of the trimeric neck and carbohydrate recognition domain of R343V mutant of human surfactant protein D in complex with alpha 1,2 dimannose. 分子名称: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose 著者 Head, J.F. 登録日 2009-02-11 公開日 2009-03-17 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Recognition of mannosylated ligands and influenza A virus by human surfactant protein D: contributions of an extended site and residue 343. Biochemistry, 48, 2009

 

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