PDB: 177 件ウェブページステータス検索Chemie searchBIRD

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7AV6	FAST in a domain-swapped dimer form 分子名称: FORMIC ACID, Photoactive yellow protein 著者 Bukhdruker, S, Remeeva, A, Ruchkin, D, Gorbachev, D, Povarova, N, Mineev, K, Goncharuk, S, Baranov, M, Mishin, A, Borshchevskiy, V. 登録日 2020-11-04 公開日 2021-06-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids. Chem Sci, 12, 2021
6QPJ	Human CLOCK PAS-A domain 分子名称: Circadian locomoter output cycles protein kaput 著者 Kwon, H, Freeman, S.L, Moody, P.C.E, Raven, E.L, Basran, J. 登録日 2019-02-14 公開日 2019-09-25 最終更新日 2019-10-09 実験手法 X-RAY DIFFRACTION (2.315 Å) 主引用文献 Heme binding to human CLOCK affects interactions with the E-box. Proc.Natl.Acad.Sci.USA, 116, 2019
3B33	Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus 分子名称: Sensor protein 著者 Osipiuk, J, Sather, A, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2007-10-19 公開日 2007-10-30 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 X-ray structure of PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus. To be Published
6ZJ8	Structure of the PAS domain from Bordetella pertussis BvgS 分子名称: Virulence sensor protein BvgS 著者 Clantin, B, Dupre, E, Jacob-Dubuisson, F, Villeret, V. 登録日 2020-06-28 公開日 2020-11-11 最終更新日 2022-12-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insight into the role of the PAS domainfor signal transduction in sensor-kinase BvgS. J.Bacteriol., 203, 2021
9AZ7	Chloride Sites in Photoactive Yellow Protein 分子名称: 4'-HYDROXYCINNAMIC ACID, CHLORIDE ION, Photoactive yellow protein 著者 Dyda, F, Schotte, F, Anfinrud, P, Cho, H.S. 登録日 2024-03-10 公開日 2024-03-20 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Watching a signaling protein function: What has been learned over four decades of time-resolved studies of photoactive yellow protein. Struct Dyn., 11, 2024
9AZ9	Chloride Sites in Photoactive Yellow Protein (Chloride-Free Reference Structure) 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Dyda, F, Schotte, F, Anfinrud, P, Cho, H.S. 登録日 2024-03-10 公開日 2024-03-20 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Watching a signaling protein function: What has been learned over four decades of time-resolved studies of photoactive yellow protein. Struct Dyn., 11, 2024
4WLA	Time Resolved Serial Femtosecond Crystallography Captures High Resolution Intermediates of PYP 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Tenboer, J, Schmidt, M. 登録日 2014-10-06 公開日 2014-12-17 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science, 346, 2014
4WL9	Time Resolved Serial Femtosecond Crystallography Captures High Resolution Intermediates of PYP 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Tenboer, J, Schmidt, M. 登録日 2014-10-06 公開日 2014-12-17 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science, 346, 2014
3PYP	PHOTOACTIVE YELLOW PROTEIN, CRYOTRAPPED EARLY LIGHT CYCLE INTERMEDIATE 分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN 著者 Genick, U.K, Soltis, S.M, Kuhn, P, Canestrelli, I.L, Getzoff, E.D. 登録日 1998-07-28 公開日 1999-06-01 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (0.85 Å) 主引用文献 Structure at 0.85 A resolution of an early protein photocycle intermediate. Nature, 392, 1998
3PHY	PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES 分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN 著者 Dux, P, Rubinstenn, G, Vuister, G.W, Boelens, R, Mulder, F.A.A, Hard, K, Hoff, W.D, Kroon, A, Crielaard, W, Hellingwerf, K.J, Kaptein, R. 登録日 1998-02-06 公開日 1998-05-27 最終更新日 2022-03-16 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the photoactive yellow protein. Biochemistry, 37, 1998
2GJ3	Crystal structure of the FAD-containing PAS domain of the protein NifL from Azotobacter vinelandii. 分子名称: ETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, Nitrogen fixation regulatory protein, ... 著者 Key, J, Hefti, M, Purcell, E, Moffat, K. 登録日 2006-03-30 公開日 2007-03-06 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.04 Å) 主引用文献 Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. Biochemistry, 46, 2007
2I9V	Structural role of Y98 in PYP: effects on fluorescence, gateway and photocycle recovery 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Savvides, S.N, Kyndt, J. 登録日 2006-09-06 公開日 2007-02-06 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural role of tyrosine 98 in photoactive yellow protein: effects on fluorescence, gateway, and photocycle recovery. Biochemistry, 46, 2007
2D01	Wild Type Photoactive Yellow Protein, P65 Form 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M. 登録日 2005-07-21 公開日 2006-04-04 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein Biochemistry, 45, 2006
2D02	R52Q Mutant of Photoactive Yellow Protein, P65 Form 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M. 登録日 2005-07-21 公開日 2006-04-04 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein Biochemistry, 45, 2006
2CMN	A Proximal Arginine Residue in the Switching Mechanism of the FixL Oxygen Sensor 分子名称: PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL 著者 Gilles-Gonzalez, M.-A, Caceres, A.I, Silva Sousa, E.H, Tomchick, D.R, Brautigam, C.A, Gonzalez, C, Machius, M. 登録日 2006-05-11 公開日 2007-05-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A Proximal Arginine R206 Participates in Switching of the Bradyrhizobium Japonicum Fixl Oxygen Sensor J.Mol.Biol., 360, 2006
2KX6	Signaling state of Photoactive Yellow Protein 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Ramachandran, P.L, Lovett, J.E, Carl, P.J, Cammarata, M, Lee, J.H, Yang, J.O, Ihee, H, Timmel, C.R, van Thor, J. 登録日 2010-04-27 公開日 2011-06-15 最終更新日 2012-07-18 実験手法 SOLUTION NMR, SOLUTION SCATTERING 主引用文献 The short-lived signaling state of the photoactive yellow protein photoreceptor revealed by combined structural probes. J.Am.Chem.Soc., 133, 2011
6UMZ	Crystal structure of photoactive yellow protein (PYP); 3-Br-p-coumaric acid chromophore 分子名称: (2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein 著者 Lin, C.-Y, Romei, M.G, Boxer, S.G. 登録日 2019-10-10 公開日 2020-07-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (0.9 Å) 主引用文献 Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
6UMY	Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Lin, C.-Y, Romei, M.G, Boxer, S.G. 登録日 2019-10-10 公開日 2020-07-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (0.923 Å) 主引用文献 Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
6UN2	Crystal structure of photoactive yellow protein (PYP); C69U construct (selenocysteine incorporation) 分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein 著者 Lin, C.-Y, Romei, M.G, Boxer, S.G. 登録日 2019-10-10 公開日 2020-07-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (0.97 Å) 主引用文献 Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
6UN0	Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct with 3-Br-p-coumaric acid chromophore 分子名称: (2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein 著者 Lin, C.-Y, Romei, M.G, Boxer, S.G. 登録日 2019-10-10 公開日 2020-07-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (0.85 Å) 主引用文献 Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020
4M4X	Structure and Dimerization Properties of the Aryl Hydrocarbon Receptor (AHR) PAS-A Domain 分子名称: Aryl hydrocarbon receptor 著者 Wu, D, Potluri, N, Kim, Y, Rastinejad, F. 登録日 2013-08-07 公開日 2013-09-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.551 Å) 主引用文献 Structure and dimerization properties of the aryl hydrocarbon receptor PAS-A domain. Mol.Cell.Biol., 33, 2013
4BBT	The PR1 Photocycle Intermediate of Photoactive Yellow Protein 分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN 著者 Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. 登録日 2012-09-27 公開日 2012-11-14 最終更新日 2019-01-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography. Proc.Natl.Acad.Sci.USA, 109, 2012
4B9O	The PR0 Photocycle Intermediate of Photoactive Yellow Protein 分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN 著者 Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. 登録日 2012-09-06 公開日 2012-11-14 最終更新日 2019-02-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography Proc.Natl.Acad.Sci.USA, 109, 2012
4BBV	The PB0 Photocycle Intermediate of Photoactive Yellow Protein 分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN 著者 Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. 登録日 2012-09-28 公開日 2012-11-14 最終更新日 2019-01-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography. Proc.Natl.Acad.Sci.USA, 109, 2012
4BBU	The PR2 Photocycle Intermediate of Photoactive Yellow Protein 分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN 著者 Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. 登録日 2012-09-27 公開日 2012-11-14 最終更新日 2019-05-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography. Proc.Natl.Acad.Sci.USA, 109, 2012

 

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