PDB: 245 件ウェブページステータス検索Chemie searchBIRD

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3ASL	Structure of UHRF1 in complex with histone tail 分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ... 著者 Arita, K, Sugita, K, Unoki, M, Hamamoto, R, Sekiyama, N, Tochio, H, Ariyoshi, M, Shirakawa, M. 登録日 2010-12-16 公開日 2012-01-25 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1 Proc.Natl.Acad.Sci.USA, 109, 2012
1F62	WSTF-PHD 分子名称: TRANSCRIPTION FACTOR WSTF, ZINC ION 著者 Pascual, J, Martinez-Yamout, M, Dyson, H.J, Wright, P.E. 登録日 2000-06-19 公開日 2000-12-27 最終更新日 2019-11-06 実験手法 SOLUTION NMR 主引用文献 Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor. J.Mol.Biol., 304, 2000
1FP0	SOLUTION STRUCTURE OF THE PHD DOMAIN FROM THE KAP-1 COREPRESSOR 分子名称: KAP-1 COREPRESSOR, ZINC ION 著者 Capili, A.D, Schultz, D.C, Rauscher III, F.J, Borden, K.L.B. 登録日 2000-08-29 公開日 2001-01-24 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Solution structure of the PHD domain from the KAP-1 corepressor: structural determinants for PHD, RING and LIM zinc-binding domains. EMBO J., 20, 2001
1MM3	Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF 分子名称: Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION 著者 Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P. 登録日 2002-09-02 公開日 2003-07-22 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003
1MM2	Solution structure of the 2nd PHD domain from Mi2b 分子名称: Mi2-beta, ZINC ION 著者 Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P. 登録日 2002-09-02 公開日 2003-07-22 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003
3ZVZ	PHD finger of human UHRF1 分子名称: E3 UBIQUITIN-PROTEIN LIGASE UHRF1, ZINC ION 著者 Lallous, N, Birck, C, Mc Ewen, A.G, Legrand, P, Samama, J.P. 登録日 2011-07-28 公開日 2011-11-30 実験手法 X-RAY DIFFRACTION (1.449 Å) 主引用文献 The Phd Finger of Human Uhrf1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers. Plos One, 6, 2011
6OIE	The double PHD finger (DPF) of MORF in complex with histone H3K14cr 分子名称: Histone H3.1t peptide, Histone acetyltransferase KAT6B, ZINC ION 著者 Klein, B.J, Kutateladze, T.G. 登録日 2019-04-09 公開日 2019-11-20 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.075 Å) 主引用文献 Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation. Nat Commun, 10, 2019
7KLO	Solution structure of the PHD1 domain of histone demethylase KDM5A 分子名称: Lysine-specific demethylase 5A, ZINC ION 著者 Longbotham, E.J, Kelly, M.J.S, Fujimori, D.G. 登録日 2020-10-30 公開日 2021-03-03 実験手法 SOLUTION NMR 主引用文献 Recognition of Histone H3 Methylation States by the PHD1 Domain of Histone Demethylase KDM5A. Acs Chem.Biol., 2021
7KLR	Solution structure of the PHD1 domain of histone demethylase KDM5A in complex with a histone H3(1-10) peptide 分子名称: Histone H3.1, Lysine-specific demethylase 5A, ZINC ION 著者 Longbotham, E.J, Kelly, M.J.S, Fujimori, D.G. 登録日 2020-10-31 公開日 2021-03-03 実験手法 SOLUTION NMR 主引用文献 Recognition of Histone H3 Methylation States by the PHD1 Domain of Histone Demethylase KDM5A. Acs Chem.Biol., 2021
7M10	PHF2 PHD Domain Complexed with Peptide From N-terminus of VRK1 分子名称: FORMIC ACID, Lysine-specific demethylase PHF2, Serine/threonine-protein kinase VRK1 N-terminus peptide, ... 著者 Horton, J.R, Cheng, X. 登録日 2021-03-11 公開日 2021-05-26 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Histone H3 N-terminal mimicry drives a novel network of methyl-effector interactions. Biochem.J., 478, 2021
2DX8	Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus 分子名称: Pygopus homolog 1, ZINC ION 著者 Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-08-24 公開日 2007-05-15 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published
2E6S	Solution structure of the PHD domain in RING finger protein 107 分子名称: E3 ubiquitin-protein ligase UHRF2, ZINC ION 著者 Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-12-28 公開日 2007-07-03 最終更新日 2022-03-09 実験手法 SOLUTION NMR 主引用文献 Solution structure of the PHD domain in RING finger protein 107 To be Published
2E6R	Solution structure of the PHD domain in SmcY protein 分子名称: Jumonji/ARID domain-containing protein 1D, ZINC ION 著者 Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-12-28 公開日 2007-07-03 最終更新日 2022-03-09 実験手法 SOLUTION NMR 主引用文献 Solution structure of the PHD domain in SmcY protein To be Published
6VFO	Solution structure of the PHD of mouse UHRF1 (NP95) 分子名称: E3 ubiquitin-protein ligase UHRF1, ZINC ION 著者 Lemak, A, Houliston, S, Duan, S, Arrowsmith, C.H. 登録日 2020-01-06 公開日 2020-06-17 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Alternative splicing and allosteric regulation modulate the chromatin binding of UHRF1. Nucleic Acids Res., 48, 2020
4L7X	Crystal structure of the DIDO PHD finger in complex with H3K4me3 分子名称: Death-inducer obliterator 1, Histone H3 peptide, ZINC ION 著者 Tong, Q, Gatchalian, J, Kutateladze, T.G. 登録日 2013-06-14 公開日 2013-07-24 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Dido3 PHD Modulates Cell Differentiation and Division. Cell Rep, 4, 2013
4LLB	Crystal Structure of MOZ double PHD finger histone H3K14ac complex 分子名称: Histone H3.1, Histone acetyltransferase KAT6A, ZINC ION 著者 Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M. 登録日 2013-07-09 公開日 2013-10-16 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification. Nucleic Acids Res., 42, 2014
4LKA	Crystal Structure of MOZ double PHD finger histone H3K9ac complex 分子名称: Histone H3.1, Histone acetyltransferase KAT6A, ZINC ION 著者 Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M. 登録日 2013-07-07 公開日 2013-10-16 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification. Nucleic Acids Res., 42, 2014
4LJN	Crystal Structure of MOZ double PHD finger 分子名称: Histone acetyltransferase KAT6A, ZINC ION 著者 Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M. 登録日 2013-07-05 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification. Nucleic Acids Res., 42, 2014
4LK9	Crystal Structure of MOZ double PHD finger histone H3 tail complex 分子名称: Histone H3.1, Histone acetyltransferase KAT6A, ZINC ION 著者 Dreveny, I, Deeves, S.E, Yue, B, Heery, D.M. 登録日 2013-07-07 公開日 2013-10-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The double PHD finger domain of MOZ/MYST3 induces alpha-helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification. Nucleic Acids Res., 42, 2014
3KQI	crystal structure of PHF2 PHD domain complexed with H3K4Me3 peptide 分子名称: CHLORIDE ION, GLYCEROL, H3K4Me3 peptide, ... 著者 Wen, H, Li, J.Z, Song, T, Lu, M, Lee, M. 登録日 2009-11-17 公開日 2010-02-02 最終更新日 2019-02-13 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation. J.Biol.Chem., 285, 2010
3LQH	Crystal structure of MLL1 PHD3-Bromo in the free form 分子名称: Histone-lysine N-methyltransferase MLL, ZINC ION 著者 Wang, Z, Patel, D.J. 登録日 2010-02-09 公開日 2010-07-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell(Cambridge,Mass.), 141, 2010
4Q6F	Crystal structure of human BAZ2A PHD zinc finger in complex with unmodified H3K4 histone peptide 分子名称: 1,2-ETHANEDIOL, Bromodomain adjacent to zinc finger domain protein 2A, ZINC ION, ... 著者 Tallant, C, Overvoorde, L, Krojer, T, Filippakopoulos, P, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Ciulli, A, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2014-04-22 公開日 2014-05-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC. Structure, 23, 2015
4QF3	Crystal structure of human BAZ2B PHD zinc finger in the free form 分子名称: Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION 著者 Tallant, C, Van Molle, I, Chirgadze, D.Y, Ciulli, A. 登録日 2014-05-19 公開日 2014-07-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC. Structure, 23, 2015
4QF2	Crystal structure of human BAZ2A PHD zinc finger in the free form 分子名称: Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, PHOSPHATE ION, ... 著者 Tallant, C, Overvoorde, L, Van Molle, I, Chirgadze, D.Y, Ciulli, A. 登録日 2014-05-19 公開日 2014-07-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC. Structure, 23, 2015
5I3L	DPF3b in complex with H3K14ac peptide 分子名称: 1,2-ETHANEDIOL, H3K14ac peptide, SODIUM ION, ... 著者 Tempel, W, Liu, Y, Walker, J.R, Zhao, A, Qin, S, Loppnau, P, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2016-02-10 公開日 2016-02-24 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of DPF3b in complex with an acetylated histone peptide. J.Struct.Biol., 195, 2016

 

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