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2VEA
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BU of 2vea by Molmil
The complete sensory module of the cyanobacterial phytochrome Cph1 in the Pr-state.
分子名称: PHYCOCYANOBILIN, PHYTOCHROME-LIKE PROTEIN CPH1
著者Essen, L.-O, Mailliet, J, Hughes, J.
登録日2007-10-18
公開日2008-09-30
最終更新日2014-02-26
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献The Structure of a Complete Phytochrome Sensory Module in the Pr Ground State.
Proc.Natl.Acad.Sci.USA, 105, 2008
5C5K
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BU of 5c5k by Molmil
Structure of the Pfr form of a canonical phytochrome
分子名称: 1,2-ETHANEDIOL, ACETATE ION, BILIVERDINE IX ALPHA, ...
著者Burgie, E.S, Vierstra, R.D.
登録日2015-06-20
公開日2016-02-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
Structure, 24, 2016
7RZW
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BU of 7rzw by Molmil
CryoEM structure of Arabidopsis thaliana phytochrome B
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome B
著者Li, H, Burgie, E.S, Vierstra, R.D, Li, H.
登録日2021-08-27
公開日2022-04-13
最終更新日2022-04-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Plant phytochrome B is an asymmetric dimer with unique signalling potential.
Nature, 604, 2022
8F5Z
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BU of 8f5z by Molmil
Composite map of CryoEM structure of Arabidopsis thaliana phytochrome A
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome A
著者Li, H, Li, H.
登録日2022-11-15
公開日2023-06-28
最終更新日2023-08-02
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The structure of Arabidopsis phytochrome A reveals topological and functional diversification among the plant photoreceptor isoforms.
Nat.Plants, 9, 2023
6TL4
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BU of 6tl4 by Molmil
Photosensory module (PAS-GAF-PHY) of Glycine max phyB
分子名称: PHYCOCYANOBILIN, Phytochrome
著者Nagano, S, Guan, K, Shenkutie, S.M, Hughes, J.E.
登録日2019-12-01
公開日2020-05-06
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural insights into photoactivation and signalling in plant phytochromes.
Nat.Plants, 6, 2020
3C2W
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BU of 3c2w by Molmil
Crystal structure of the photosensory core domain of P. aeruginosa bacteriophytochrome PaBphP in the Pfr state
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Yang, X, Kuk, J, Moffat, K.
登録日2008-01-25
公開日2008-09-23
最終更新日2013-06-19
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction.
Proc.Natl.Acad.Sci.USA, 105, 2008
4GW9
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BU of 4gw9 by Molmil
Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor
分子名称: BILIVERDINE IX ALPHA, bacteriophytochrome
著者Bellini, D, Papiz, M.Z.
登録日2012-09-01
公開日2012-09-26
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor.
Structure, 20, 2012
5UYR
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BU of 5uyr by Molmil
Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP mutant D199A from Xanthomonas campestris
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Otero, L.H, Klinke, S, Goldbaum, F.A, Bonomi, H.R.
登録日2017-02-24
公開日2018-02-28
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.45 Å)
主引用文献Pr-favoured variants of the bacteriophytochrome from the plant pathogen Xanthomonas campestris hint on light regulation of virulence-associated mechanisms.
Febs J., 288, 2021
5AKP
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BU of 5akp by Molmil
Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP from Xanthomonas campestris bound to BV chromophore
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BILIVERDINE IX ALPHA, CHLORIDE ION, ...
著者Otero, L.H, Klinke, S, Goldbaum, F.A, Bonomi, H.R.
登録日2015-03-04
公開日2016-05-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structure of the Full-Length Bacteriophytochrome from the Plant Pathogen Xanthomonas Campestris Provides Clues to its Long-Range Signaling Mechanism.
J.Mol.Biol., 428, 2016
3ZQ5
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BU of 3zq5 by Molmil
Structure of the Y263F mutant of the cyanobacterial phytochrome Cph1
分子名称: ACETATE ION, GLYCEROL, PHOSPHATE ION, ...
著者Mailliet, J, Psakis, G, Sineshchekov, V, Essen, L.-O, Hughes, J.
登録日2011-06-07
公開日2011-11-30
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Spectroscopy and a High-Resolution Crystal Structure of Tyr263 Mutants of Cyanobacterial Phytochrome Cph1.
J.Mol.Biol., 413, 2011
6G20
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BU of 6g20 by Molmil
Crystal structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its functional Meta-F intermediate state.
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, ...
著者Schmidt, A, Sauthof, L, Szczepek, M, Scheerer, P.
登録日2018-03-22
公開日2018-11-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structural snapshot of a bacterial phytochrome in its functional intermediate state.
Nat Commun, 9, 2018
3G6O
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BU of 3g6o by Molmil
Crystal structure of P. aeruginosa bacteriophytochrome PaBphP photosensory core domain mutant Q188L
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Yang, X, Kuk, J, Moffat, K.
登録日2009-02-07
公開日2009-09-22
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome
Proc.Natl.Acad.Sci.USA, 106, 2009
5NWN
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BU of 5nwn by Molmil
Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, dark
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Takala, H, Westehoff, S, Ihalainen, J.A.
登録日2017-05-07
公開日2018-04-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
6G1Z
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BU of 6g1z by Molmil
Crystal structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its Pfr state.
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, ...
著者Sauthof, L, Schmidt, A, Szczepek, M, Scheerer, P.
登録日2018-03-22
公開日2018-11-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Structural snapshot of a bacterial phytochrome in its functional intermediate state.
Nat Commun, 9, 2018
5OY5
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BU of 5oy5 by Molmil
Monomeric crystal structure of RpBphP1 photosensory core domain from the bacterium Rhodopseudomonas palustris
分子名称: BILIVERDINE IX ALPHA, BphP1
著者Papiz, M.Z, Bellini, D.
登録日2017-09-07
公開日2019-02-06
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Insights into the light-induced molecular switch of the bacteriophytochrome RpBphP1 probed by SAXS, modelling and UV-Vis optical properties
To Be Published
7L5A
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BU of 7l5a by Molmil
Crystal structure of the photosensory module from Xanthomonas campestris bacteriophytochrome XccBphP in the Pfr state
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Otero, L.H, Antelo, G, Sanchez-Lamas, M, Klinke, S, Goldbaum, F.A, Rinaldi, J, Bonomi, H.R.
登録日2020-12-21
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level.
Sci Adv, 7, 2021
7L59
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BU of 7l59 by Molmil
Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP-G454E variant from Xanthomonas campestris in the Pfr state
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Otero, L.H, Antelo, G, Sanchez-Lamas, M, Klinke, S, Goldbaum, F.A, Rinaldi, J, Bonomi, H.R.
登録日2020-12-21
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level.
Sci Adv, 7, 2021
5HSQ
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BU of 5hsq by Molmil
The surface engineered photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form, chromophore modelled with an endocyclic double bond in pyrrole ring A.
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome protein, CALCIUM ION, ...
著者Nagano, S, Scheerer, P, Zubow, K, Lamparter, T, Krauss, N.
登録日2016-01-26
公開日2016-08-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The Crystal Structures of the N-terminal Photosensory Core Module of Agrobacterium Phytochrome Agp1 as Parallel and Anti-parallel Dimers.
J.Biol.Chem., 291, 2016
5I5L
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BU of 5i5l by Molmil
The photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form, chromophore modelled with an endocyclic double bond in pyrrole ring A
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome protein, CALCIUM ION, ...
著者Nagano, S, Scheerer, P, Zubow, K, Lamparter, T, Krauss, N.
登録日2016-02-15
公開日2016-08-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The Crystal Structures of the N-terminal Photosensory Core Module of Agrobacterium Phytochrome Agp1 as Parallel and Anti-parallel Dimers.
J.Biol.Chem., 291, 2016
3IBR
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BU of 3ibr by Molmil
Crystal Structure of P. aeruginosa Bacteriophytochrome Photosensory Core Module Mutant Q188L in the Mixed Pr/Pfr State
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Yang, X, Kuk, J, Moffat, K.
登録日2009-07-16
公開日2009-09-22
最終更新日2021-10-13
実験手法X-RAY DIFFRACTION (2.97 Å)
主引用文献Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome.
Proc.Natl.Acad.Sci.USA, 106, 2009
6NDO
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BU of 6ndo by Molmil
Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP mutant L193N from Xanthomonas campestris
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Otero, L.H, Sirigu, S, Klinke, S, Rinaldi, J, Conforte, V, Malamud, F, Goldbaum, F.A, Chavas, L, Bonomi, H.R.
登録日2018-12-14
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.58 Å)
主引用文献Pr-favoured variants of the bacteriophytochrome from the plant pathogen Xanthomonas campestris hint on light regulation of virulence-associated mechanisms.
Febs J., 288, 2021
6NDP
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BU of 6ndp by Molmil
Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP mutant L193Q from Xanthomonas campestris
分子名称: BILIVERDINE IX ALPHA, Bacteriophytochrome
著者Otero, L.H, Sirigu, S, Klinke, S, Rinaldi, J, Conforte, V, Malamud, F, Goldbaum, F.A, Chavas, L, Bonomi, H.R.
登録日2018-12-14
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.89 Å)
主引用文献Pr-favoured variants of the bacteriophytochrome from the plant pathogen Xanthomonas campestris hint on light regulation of virulence-associated mechanisms.
Febs J., 288, 2021
7JRI
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BU of 7jri by Molmil
High-resolution Crystal Structures of Transient Intermediates in the Phytochrome Photocycle, 33 ms structure
分子名称: 3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
著者Schmidt, M, Stojkovic, E.
登録日2020-08-12
公開日2021-04-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献High-resolution crystal structures of transient intermediates in the phytochrome photocycle.
Structure, 29, 2021
7JR5
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BU of 7jr5 by Molmil
Real Time Reaction Intermediates in Stigmatella Bacteriophytochrome P2
分子名称: 3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-5-[[(3~{S})-4-ethyl-3-methyl-2-oxidanylidene-1,3-dihydropyrrol-5-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
著者Schmidt, M.
登録日2020-08-11
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献High-resolution crystal structures of transient intermediates in the phytochrome photocycle.
Structure, 29, 2021
6ET7
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BU of 6et7 by Molmil
Activated heterodimer of the bacteriophytochrome regulated diguanylyl cyclase variant - S505V A526V - from Idiomarina species A28L
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, CHLORIDE ION, Diguanylate cyclase (GGDEF) domain-containing protein
著者Gourinchas, G, Winkler, A.
登録日2017-10-25
公開日2018-06-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.852 Å)
主引用文献Asymmetric activation mechanism of a homodimeric red light regulated photoreceptor.
Elife, 7, 2018

 

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