Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5HI0
DownloadVisualize
BU of 5hi0 by Molmil
The Substrate Binding Mode and Chemical Basis of a Reaction Specificity Switch in Oxalate Decarboxylase
Descriptor: COBALT (II) ION, OXALATE ION, Oxalate decarboxylase OxdC, ...
Authors:Zhu, W, Easthon, L.M, Reinhardt, L.A, Tu, C, Cohen, S.E, Silverman, D.N, Allen, K.N, Richards, N.G.J.
Deposit date:2016-01-11
Release date:2016-04-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase.
Biochemistry, 55, 2016
4MET
DownloadVisualize
BU of 4met by Molmil
Assigning the EPR Fine Structure Parameters of the Mn(II) Centers in Bacillus subtilis Oxalate Decarboxylase by Site-Directed Mutagenesis and DFT/MM Calculations
Descriptor: COBALT (II) ION, Oxalate decarboxylase OxdC
Authors:Campomanes, P, Kellett, W.F, Easthon, L.M, Ozarowski, A, Allen, K.N, Angerhofer, A, Rothlisberger, U, Richards, N.G.J.
Deposit date:2013-08-27
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.095 Å)
Cite:Assigning the EPR Fine Structure Parameters of the Mn(II) Centers in Bacillus subtilis Oxalate Decarboxylase by Site-Directed Mutagenesis and DFT/MM Calculations.
J.Am.Chem.Soc., 136, 2014
5E1R
DownloadVisualize
BU of 5e1r by Molmil
Crystal structure of pecan (carya illinoinensis) vicilin, a new food allergen
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 7S vicilin, COPPER (II) ION
Authors:Zhang, Y.Z.
Deposit date:2015-09-30
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.651 Å)
Cite:Identification and Characterization of a New Pecan [Carya illinoinensis (Wangenh.) K. Koch] Allergen, Car i 2.
J.Agric.Food Chem., 64, 2016
6ORM
DownloadVisualize
BU of 6orm by Molmil
Crystal Structure of Peruvianin-I (Cysteine peptidase from Thevetia peruviana latex)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Peruvianin-I, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Cruz, W.T, Bezerra, E.H.S, da Silva, F.M.S, Freire, V.N, Ramos, M.V, Rocha, B.A.M, Freitas, C.D.T.
Deposit date:2019-04-30
Release date:2020-05-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure and specific location of a germin-like protein with proteolytic activity from Thevetia peruviana.
Plant Sci., 298, 2020
8OFD
DownloadVisualize
BU of 8ofd by Molmil
Crystal structure of beta-conglutin from Lupinus albus refined to 2.81 A
Descriptor: ACETATE ION, Conglutin beta 1, POTASSIUM ION, ...
Authors:Dolot, R.M, O'Sullivan, C.K, Jauset-Rubio, M.
Deposit date:2023-03-15
Release date:2023-06-14
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:First crystal structure of beta-conglutin, a major lupin allergen from Lupinus albus seeds
To Be Published
5CAD
DownloadVisualize
BU of 5cad by Molmil
Crystal structure of the vicilin from Solanum melongena revealed existence of different anionic ligands in structurally similar pockets
Descriptor: ACETATE ION, MAGNESIUM ION, PYROGLUTAMIC ACID, ...
Authors:Jain, A, Kumar, A, Salunke, D.M.
Deposit date:2015-06-29
Release date:2016-04-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets
Sci Rep, 6, 2016
4LEJ
DownloadVisualize
BU of 4lej by Molmil
Crystal Structure of the Korean pine (Pinus koraiensis) vicilin
Descriptor: COPPER (II) ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Jin, T.C, Wang, Y, Zhang, Y.Z.
Deposit date:2013-06-25
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Crystal Structure of Korean Pine ( Pinus koraiensis ) 7S Seed Storage Protein with Copper Ligands.
J.Agric.Food Chem., 62, 2014
5YJS
DownloadVisualize
BU of 5yjs by Molmil
Structure of vicilin from Capsicum annuum
Descriptor: 2-HYDROXYBENZOIC ACID, CHLORIDE ION, COPPER (I) ION, ...
Authors:Shikhi, M, Nair, D.T, Salunke, D.M.
Deposit date:2017-10-11
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structure-guided identification of function: role ofCapsicum annuumvicilin during oxidative stress.
Biochem. J., 475, 2018
1OD5
DownloadVisualize
BU of 1od5 by Molmil
Crystal structure of glycinin A3B4 subunit homohexamer
Descriptor: CARBONATE ION, GLYCININ, MAGNESIUM ION
Authors:Adachi, M, Kanamori, J, Masuda, T, Yagasaki, K, Kitamura, K, Mikami, B, Utsumi, S.
Deposit date:2003-02-13
Release date:2003-06-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Soybean 11S Globulin: Glycinin A3B4 Homohexamer
Proc.Natl.Acad.Sci.USA, 100, 2003
1FI2
DownloadVisualize
BU of 1fi2 by Molmil
CRYSTAL STRUCTURE OF GERMIN (OXALATE OXIDASE)
Descriptor: MANGANESE (II) ION, OXALATE OXIDASE
Authors:Woo, E.J, Dunwell, J.M, Goodenough, P.W, Marvier, A.C, Pickersgill, R.W.
Deposit date:2000-08-03
Release date:2001-05-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities.
Nat.Struct.Biol., 7, 2000
1PHS
DownloadVisualize
BU of 1phs by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF THE SEED STORAGE PROTEIN PHASEOLIN AT 3 ANGSTROMS RESOLUTION
Descriptor: PHASEOLIN, BETA-TYPE PRECURSOR
Authors:Lawrence, M.C, Suzuki, E, Varghese, J.N, Davis, P.C, Vandonkelaar, A, Tulloch, P.A, Colman, P.M.
Deposit date:1990-03-21
Release date:1990-10-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:The three-dimensional structure of the seed storage protein phaseolin at 3 A resolution.
EMBO J., 9, 1990
6B4S
DownloadVisualize
BU of 6b4s by Molmil
Crystal Structure of Brazil nut (Bertholletia excelsa) allergen Ber e 2
Descriptor: 11S globulin
Authors:Zhang, Y.Z, Guo, F.
Deposit date:2017-09-27
Release date:2018-12-12
Method:X-RAY DIFFRACTION (2.035 Å)
Cite:Crystal Structure of Brazil nut (Bertholletia excelsa) allergen Ber e 2
to be published
1FXZ
DownloadVisualize
BU of 1fxz by Molmil
CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER
Descriptor: GLYCININ G1
Authors:Adachi, M, Takenaka, Y, Gidamis, A.B, Mikami, B, Utsumi, S.
Deposit date:2000-09-28
Release date:2001-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of soybean proglycinin A1aB1b homotrimer.
J.Mol.Biol., 305, 2001
3KSC
DownloadVisualize
BU of 3ksc by Molmil
Crystal structure of pea prolegumin, an 11S seed globulin from Pisum sativum L.
Descriptor: GLYCEROL, LegA class, SULFATE ION
Authors:Tandang-Silvas, M.R.G, Fukuda, T, Fukuda, C, Prak, K, Cabanos, C, Kimura, A, Itoh, T, Mikami, B, Maruyama, N, Utsumi, S.
Deposit date:2009-11-21
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
3KGL
DownloadVisualize
BU of 3kgl by Molmil
Crystal structure of procruciferin, 11S globulin from Brassica napus
Descriptor: Cruciferin, GLYCEROL, SULFATE ION
Authors:Tandang-Silvas, M.R, Mikami, B, Maruyama, N, Utsumi, S.
Deposit date:2009-10-29
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.981 Å)
Cite:Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
6L4C
DownloadVisualize
BU of 6l4c by Molmil
Crystal structure of vicilin from Corylus avellana (Hazelnut)
Descriptor: 48-kDa glycoprotein, COPPER (II) ION
Authors:Shikhi, M, Salunke, D.M.
Deposit date:2019-10-16
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.191 Å)
Cite:Comparative study of 7S globulin from Corylus avellana and Solanum lycopersicum revealed importance of salicylic acid and Cu-binding loop in modulating their function.
Biochem.Biophys.Res.Commun., 522, 2020
6L4M
DownloadVisualize
BU of 6l4m by Molmil
Crystal structure of vicilin from Solanum lycopersicum (tomato)
Descriptor: 2-HYDROXYBENZOIC ACID, Vicilin
Authors:Jain, A, Salunke, D.M.
Deposit date:2019-10-18
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.302 Å)
Cite:Comparative study of 7S globulin from Corylus avellana and Solanum lycopersicum revealed importance of salicylic acid and Cu-binding loop in modulating their function.
Biochem.Biophys.Res.Commun., 522, 2020
3C3V
DownloadVisualize
BU of 3c3v by Molmil
Crystal structure of peanut major allergen ara h 3
Descriptor: Arachin Arah3 isoform, SODIUM ION
Authors:Jin, T, Zhang, Y.
Deposit date:2008-01-28
Release date:2009-02-24
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of Ara h 3, a major allergen in peanut.
Mol.Immunol., 46, 2009
7U1H
DownloadVisualize
BU of 7u1h by Molmil
Crystal structure of Lens culinaris vicilin
Descriptor: Allergen Len c 1.0101
Authors:Robinson, K.A, Bakestani, I.D, Loewen, M.C.
Deposit date:2022-02-21
Release date:2022-03-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Pea and lentil 7S globulin crystal structures with comparative immunoglobulin epitope mapping.
Food Chem (Oxf), 5, 2022
7U1I
DownloadVisualize
BU of 7u1i by Molmil
Crystal structure of Pisum sativum vicilin
Descriptor: Vicilin
Authors:Beavington, B.A.G, Bakestani, I.D, Robinson, K.A, Loewen, M.C.
Deposit date:2022-02-21
Release date:2022-03-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Pea and lentil 7S globulin crystal structures with comparative immunoglobulin epitope mapping.
Food Chem (Oxf), 5, 2022
7U1J
DownloadVisualize
BU of 7u1j by Molmil
Crystal structure of Pisum sativum convicilin
Descriptor: Convicilin
Authors:Bakestani, I.D, Robinson, K.A, Loewen, M.C.
Deposit date:2022-02-21
Release date:2022-03-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Pea and lentil 7S globulin crystal structures with comparative immunoglobulin epitope mapping.
Food Chem (Oxf), 5, 2022
3EHK
DownloadVisualize
BU of 3ehk by Molmil
Crystal structure of Pru du amandin, an allergenic protein from prunus dulcis
Descriptor: Prunin
Authors:Gaur, V, Salunke, D.M.
Deposit date:2008-09-13
Release date:2009-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of Pru du amandin, an allergenic protein from prunus dulcis
To be published
3FZ3
DownloadVisualize
BU of 3fz3 by Molmil
Crystal Structure of almond Pru1 protein
Descriptor: CALCIUM ION, Prunin, SODIUM ION
Authors:Jin, T.C, Zhang, Y.Z.
Deposit date:2009-01-23
Release date:2009-11-10
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of prunin-1, a major component of the almond (Prunus dulcis) allergen amandin.
J.Agric.Food Chem., 57, 2009
1IPJ
DownloadVisualize
BU of 1ipj by Molmil
CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS COMPLEXES WITH N-ACETYL-D-GLUCOSAMINE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-CONGLYCININ, BETA CHAIN
Authors:Maruyama, N, Adachi, M, Takahashi, K, Yagasaki, K, Kohno, M, Takenaka, Y, Okuda, E, Nakagawa, S, Mikami, B, Utsumi, S.
Deposit date:2001-05-16
Release date:2002-05-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers.
Eur.J.Biochem., 268, 2001
1IPK
DownloadVisualize
BU of 1ipk by Molmil
CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS
Descriptor: BETA-CONGLYCININ, BETA CHAIN
Authors:Maruyama, N, Adachi, M, Takahashi, K, Yagasaki, K, Kohno, M, Takenaka, Y, Okuda, E, Nakagawa, S, Mikami, B, Utsumi, S.
Deposit date:2001-05-16
Release date:2002-05-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers.
Eur.J.Biochem., 268, 2001

 

123>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon