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4LIJ
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BU of 4lij by Molmil
Crystal structure of a far upstream element (FUSE) binding protein 1 (FUBP1) from Homo sapiens at 1.95 A resolution
Descriptor: Far upstream element-binding protein 1, PHOSPHATE ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology, Partnership for T-Cell Biology (TCELL)
Deposit date:2013-07-02
Release date:2013-11-27
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a far upstream element (FUSE) binding protein 1 (FUBP1) from Homo sapiens at 1.95 A resolution
To be published
7CRE
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BU of 7cre by Molmil
hnRNPK KH3 domain in complex with a ssDNA fragment from the SIRLOIN element
Descriptor: Heterogeneous nuclear ribonucleoprotein K, SODIUM ION, ssDNA fragment
Authors:Yao, J, Sun, Q.
Deposit date:2020-08-13
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Nuclear import receptors and hnRNPK mediates nuclear import and stress granule localization of SIRLOIN.
Cell.Mol.Life Sci., 78, 2021
6GQE
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BU of 6gqe by Molmil
X-ray structure of KH1-2 domain of IMP3
Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3
Authors:Janowski, R, Schlundt, A, Sattler, M, Niessing, D.
Deposit date:2018-06-07
Release date:2019-04-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Combinatorial recognition of clustered RNA elements by the multidomain RNA-binding protein IMP3.
Nat Commun, 10, 2019
8COO
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BU of 8coo by Molmil
Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA
Descriptor: Insulin-like growth factor 2 mRNA-binding protein 1, RNA_(5'-R(*(UP*CP*GP*GP*(6MZ)P*CP*U)-3')
Authors:Nicastro, G, Abis, G, Taylor, I.A, Ramos, A.
Deposit date:2023-02-28
Release date:2024-02-07
Method:SOLUTION NMR
Cite:Direct m6A recognition by IMP1 underlays an alternative model of target selection for non-canonical methyl-readers.
Nucleic Acids Res., 51, 2023
3KRM
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BU of 3krm by Molmil
Imp1 kh34
Descriptor: GLYCEROL, Insulin-like growth factor 2 mRNA-binding protein 1
Authors:Chao, J.A, Singer, R.H, Almo, S.C, Patskovsky, Y.
Deposit date:2009-11-18
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:ZBP1 recognition of beta-actin zipcode induces RNA looping.
Genes Dev., 24, 2010
4WAN
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BU of 4wan by Molmil
Crystal structure of Msl5 protein in complex with RNA at 1.8 A
Descriptor: ACETATE ION, Branchpoint-bridging protein, GLYCEROL, ...
Authors:Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S.
Deposit date:2014-08-29
Release date:2014-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
Rna, 21, 2015
4WAL
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BU of 4wal by Molmil
Crystal structure of selenomethionine Msl5 protein in complex with RNA at 2.2 A
Descriptor: Branchpoint-bridging protein, CHLORIDE ION, GLYCEROL, ...
Authors:Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S.
Deposit date:2014-08-29
Release date:2014-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
Rna, 21, 2015
6FBL
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BU of 6fbl by Molmil
NMR Solution Structure of MINA-1(254-334)
Descriptor: MINA-1
Authors:Michel, E, Allain, F.
Deposit date:2017-12-19
Release date:2019-01-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans.
Cell Death Differ., 26, 2019
3VKE
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BU of 3vke by Molmil
Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides
Descriptor: DNA (5'-D(P*AP*CP*CP*CP*CP*A)-3'), Poly(rC)-binding protein 1
Authors:Traore, D.A.K, Wilce, M.C.J, Wilce, J.A.
Deposit date:2011-11-15
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides
Nucleic Acids Res., 40, 2012
6QEY
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BU of 6qey by Molmil
IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties
Descriptor: ACETONITRILE, Insulin-like growth factor 2 mRNA-binding protein 1, PHOSPHATE ION
Authors:Dagil, R, Ball, N.J, Ogrodowicz, R.W, Purkiss, A.G, Taylor, I.A, Ramos, A.
Deposit date:2019-01-09
Release date:2019-03-27
Last modified:2019-09-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:IMP1 KH1 and KH2 domains create a structural platform with unique RNA recognition and re-modelling properties.
Nucleic Acids Res., 47, 2019
6Y2D
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BU of 6y2d by Molmil
Crystal structure of the second KH domain of FUBP1
Descriptor: Far upstream element-binding protein 1, GLYCEROL, SULFATE ION
Authors:Ni, X, Chaikuad, A, Joerger, A.C, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-02-15
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1.
Sci Rep, 10, 2020
6Y2C
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BU of 6y2c by Molmil
Crystal structure of the third KH domain of FUBP1
Descriptor: 1,2-ETHANEDIOL, Far upstream element-binding protein 1, ZINC ION
Authors:Ni, X, Joerger, A.C, Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-02-15
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1.
Sci Rep, 10, 2020
6Y24
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BU of 6y24 by Molmil
Crystal structure of fourth KH domain of FUBP1
Descriptor: 1,2-ETHANEDIOL, Far upstream element-binding protein 1
Authors:Ni, X, Joerger, A.C, Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-02-14
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1.
Sci Rep, 10, 2020
6ROL
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BU of 6rol by Molmil
Structure of IMP2 KH34 domains
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Insulin-like growth factor 2 mRNA-binding protein 2, ...
Authors:Bhaskar, V, Biswas, J, Singer, R.H, Chao, J.A.
Deposit date:2019-05-13
Release date:2019-10-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structural basis for RNA selectivity by the IMP family of RNA-binding proteins.
Nat Commun, 10, 2019
1J5K
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BU of 1j5k by Molmil
COMPLEX OF THE KH3 DOMAIN OF HNRNP K WITH A SINGLE_STRANDED 10MER DNA OLIGONUCLEOTIDE
Descriptor: 5'-D(*AP*TP*AP*T*TP*CP*CP*CP*TP*C)-3', Heterogeneous nuclear ribonucleoprotein K
Authors:Clore, G.M, Braddock, D.T.
Deposit date:2002-05-13
Release date:2002-07-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Molecular basis of sequence-specific single-stranded DNA recognition by KH domains: solution structure of a complex between hnRNP K KH3 and single-stranded DNA.
EMBO J., 21, 2002
4B8T
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BU of 4b8t by Molmil
RNA BINDING PROTEIN Solution structure of the third KH domain of KSRP in complex with the G-rich target sequence.
Descriptor: 5'-R(*AP*GP*GP*GP*UP)-3', KH-TYPE SPLICING REGULATORY PROTEIN
Authors:Nicastro, G, Garcia-Mayoral, M.F, Hollingworth, D, Kelly, G, Martin, S.R, Briata, P, Gherzi, R, Ramos, A.
Deposit date:2012-08-30
Release date:2012-11-07
Last modified:2013-01-16
Method:SOLUTION NMR
Cite:Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis
Nat.Struct.Mol.Biol., 19, 2012
7VKL
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BU of 7vkl by Molmil
Crystal structure of MmIMP3-KH12 in complex with zipcode RNA
Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3, RNA (8-mer)
Authors:Li, X.J, Wu, B.X.
Deposit date:2021-09-30
Release date:2022-10-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of MmIMP3-KH12 in complex with zipcode RNA
To Be Published
1J4W
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BU of 1j4w by Molmil
COMPLEX OF THE KH3 and KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29mer DNA OLIGONUCLEOTIDE FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE
Descriptor: DNA (5'-D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*GP*T)-3'), FUSE binding protein
Authors:Clore, G.M, Braddock, D.T.
Deposit date:2001-11-30
Release date:2002-03-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure and dynamics of KH domains from FBP bound to single-stranded DNA.
Nature, 415, 2002
7WW3
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BU of 7ww3 by Molmil
Crystal structure of MmIMP1-KH34 tandem domain
Descriptor: Insulin-like growth factor 2 mRNA-binding protein 1
Authors:Li, X.J, Wu, B.X.
Deposit date:2022-02-12
Release date:2023-02-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of MmIMP1-KH34 tandem domain
To Be Published
1K1G
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BU of 1k1g by Molmil
STRUCTURAL BASIS FOR RECOGNITION OF THE INTRON BRANCH SITE RNA BY SPLICING FACTOR 1
Descriptor: 5'-R(*UP*AP*UP*AP*CP*UP*AP*AP*CP*AP*A)-3', SF1-Bo isoform
Authors:Liu, Z, Luyten, I, Bottomley, M.J, Messias, A.C, Houngninou-Molango, S, Sprangers, R, Zanier, K, Kramer, A, Sattler, M.
Deposit date:2001-09-25
Release date:2001-11-07
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural basis for recognition of the intron branch site RNA by splicing factor 1.
Science, 294, 2001
1KHM
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BU of 1khm by Molmil
C-TERMINAL KH DOMAIN OF HNRNP K (KH3)
Descriptor: PROTEIN (HNRNP K)
Authors:Baber, J, Libutti, D, Levens, D, Tjandra, N.
Deposit date:1999-01-07
Release date:2000-01-12
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:High precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor.
J.Mol.Biol., 289, 1999
7YEY
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BU of 7yey by Molmil
Structure of MmIGF2BP3-KH12 in complex with 8-mer RNA
Descriptor: Insulin-like growth factor 2 mRNA-binding protein 3, RNA (5'-R(*CP*AP*CP*GP*GP*CP*AP*C)-3')
Authors:Li, X.J, Wu, B.X.
Deposit date:2022-07-06
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of MmIGF2BP3-KH12 in complex with 8-mer RNA
To Be Published
5WWX
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BU of 5wwx by Molmil
Crystal structure of the KH2 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C complex with RNA
Descriptor: NICKEL (II) ION, RNA (5'-R(P*AP*GP*AP*GP*U)-3'), RNA-binding E3 ubiquitin-protein ligase MEX3C
Authors:Yang, L, Wang, C, Li, F, Gong, Q.
Deposit date:2017-01-05
Release date:2017-08-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity
J. Biol. Chem., 292, 2017
5WWW
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BU of 5www by Molmil
Crystal structure of the KH1 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C complex with RNA
Descriptor: RNA (5'-R(*GP*UP*UP*UP*AP*G)-3'), RNA-binding E3 ubiquitin-protein ligase MEX3C
Authors:Yang, L, Wang, C, Li, F, Gong, Q.
Deposit date:2017-01-05
Release date:2017-08-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity
J. Biol. Chem., 292, 2017
5WWZ
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BU of 5wwz by Molmil
Crystal structure of the KH2 domain of human RNA-binding E3 ubiquitin-protein ligase MEX-3C
Descriptor: RNA-binding E3 ubiquitin-protein ligase MEX3C, SULFATE ION
Authors:Yang, L, Wang, C, Li, F, Gong, Q.
Deposit date:2017-01-05
Release date:2017-08-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity
J. Biol. Chem., 292, 2017

 

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PDB entries from 2024-03-27

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