Pairwise fitting pdb-4v5m on pdb-5afi by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-5afi by gmfit(PID:3555097).





RANK[1] Corr.Coeff:0.942

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-5afi)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.942
0.827
0.797
0.771
0.771
0.762
0.761
0.752
0.751
0.742







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5afi"(PDB-format) or 
 "5afi"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.754473,-0.144302,0.640272 133.028221 center 0,0,0 model #1
move 159.429470,159.027495,159.434590 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!