Pairwise fitting pdb-4v5m on pdb-4v6y by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-4v6y by gmfit(PID:4099388).





RANK[1] Corr.Coeff:0.927

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-4v6y)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.927
0.819
0.793
0.749
0.748
0.747
0.746
0.741
0.740
0.735







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6y"(PDB-format) or 
 "4v6y"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.741843,-0.173415,0.647762 135.164052 center 0,0,0 model #1
move 178.808082,186.175370,187.536317 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v6y)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4099388)]