Pairwise fitting pdb-4v5m on pdb-4v6y by gmfit



Pairwise fitting of target pdb-4v5m on reference pdb-4v6y by gmfit(PID:4099388).

RANK[1] Corr.Coeff:0.927 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(pdb-4v6y)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.927 0.819 0.793 0.749 0.748 0.747 0.746 0.741 0.740 0.735

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v6y"(PDB-format) or "4v6y"(mmCIF-format), and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.741843,-0.173415,0.647762 135.164052 center 0,0,0 model #1
    move 178.808082,186.175370,187.536317 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v6y)] [Download the target GMM(pdb 4v5m)] [Download gmfit result file(4099388)]