Pairwise fitting pdb-4v5m on pdb-4v69 by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-4v69 by gmfit(PID:4131822).





RANK[1] Corr.Coeff:0.947

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-4v69)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.947
0.811
0.805
0.788
0.783
0.776
0.759
0.756
0.743
0.738







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v69"(PDB-format) or 
 "4v69"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.570010,-0.530302,0.627590 8.005584 center 0,0,0 model #1
move 1.600232,-2.023517,-1.726668 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v69)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4131822)]