Pairwise fitting pdb-4v5m on pdb-4v4b by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-4v4b by gmfit(PID:4101418).





RANK[1] Corr.Coeff:0.909

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-4v4b)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
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Corr.Coeff.
0.909
0.795
0.790
0.776
0.750
0.749
0.738
0.736
0.720
0.719







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v4b"(PDB-format) or 
 "4v4b"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.600538,-0.453416,0.658610 8.908094 center 0,0,0 model #1
move -1.318114,-3.063018,-3.130356 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v4b)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4101418)]