Pairwise fitting pdb-4v5m on pdb-4v4b by gmfit



Pairwise fitting of target pdb-4v5m on reference pdb-4v4b by gmfit(PID:4101418).

RANK[1] Corr.Coeff:0.909 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(pdb-4v4b)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.909 0.795 0.790 0.776 0.750 0.749 0.738 0.736 0.720 0.719

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v4b"(PDB-format) or "4v4b"(mmCIF-format), and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.600538,-0.453416,0.658610 8.908094 center 0,0,0 model #1
    move -1.318114,-3.063018,-3.130356 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v4b)] [Download the target GMM(pdb 4v5m)] [Download gmfit result file(4101418)]