Pairwise fitting pdb-4v5m on pdb-3ja1 by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-3ja1 by gmfit(PID:3779252).





RANK[1] Corr.Coeff:0.952

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-3ja1)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.952
0.830
0.796
0.787
0.786
0.778
0.767
0.763
0.755
0.743







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3ja1"(PDB-format) or 
 "3ja1"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.685697,-0.027149,0.727381 7.849173 center 0,0,0 model #1
move 188.295358,187.347194,188.874766 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!