Pairwise fitting pdb-4v5m on pdb-3j9z by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-3j9z by gmfit(PID:4100986).





RANK[1] Corr.Coeff:0.953

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-3j9z)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.953
0.825
0.796
0.790
0.785
0.770
0.766
0.766
0.750
0.748







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9z"(PDB-format) or 
 "3j9z"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.694817,-0.215138,0.686254 7.123804 center 0,0,0 model #1
move 185.170905,188.463382,188.537984 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j9z)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4100986)]