Pairwise fitting pdb-4v5m on emdb-6550 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-6550 by gmfit(PID:3865995).





RANK[1] Corr.Coeff:0.914

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-6550)

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Cryo-EM map of EF4-bound ribosomal complexe [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.914
0.790
0.776
0.755
0.747
0.739
0.727
0.716
0.711
0.708







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6550.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.659637,-0.412553,0.628235 65.992514 center 0,0,0 model #1
move 214.727539,212.065543,213.874206 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!