Pairwise fitting pdb-4v5m on emdb-6396 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-6396 by gmfit(PID:3568803).





RANK[1] Corr.Coeff:0.818

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-6396)

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The structure of BipA in GTP form bound to the ratcheted ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.818
0.789
0.775
0.755
0.732
0.726
0.715
0.708
0.697
0.697







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6396.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.755018,0.655314,0.022618 153.816243 center 0,0,0 model #1
move 1.998082,2.247299,3.869792 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!