Pairwise fitting pdb-4v5m on emdb-6211 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-6211 by gmfit(PID:2170490).





RANK[1] Corr.Coeff:0.887

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-6211)

display:



color:


Cryo-EM structure of ribosomal protein S1 on the ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.887
0.762
0.747
0.734
0.708
0.697
0.697
0.688
0.687
0.677







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6211.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.724493,0.684950,-0.077156 173.899761 center 0,0,0 model #1
move 187.871356,187.208762,187.809934 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!