Pairwise fitting pdb-4v5m on emdb-5841 by gmfit



Pairwise fitting of target pdb-4v5m on reference emdb-5841 by gmfit(PID:1351818).

RANK[1] Corr.Coeff:0.908 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(emdb-5841)
display:
color:
EttA-bound E. coli 70S ribosome complex containing P-site tRNA and A-site tRNA (raw map) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.908 0.787 0.755 0.734 0.729 0.709 0.704 0.702 0.701 0.696

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5841.map.gz", and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.731554,-0.679415,0.056782 179.837943 center 0,0,0 model #1
    move 178.925396,185.688278,185.021110 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!