Pairwise fitting pdb-4v5m on emdb-5562 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-5562 by gmfit(PID:2106098).





RANK[1] Corr.Coeff:0.925

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-5562)

display:



color:


tetracycline resistance protein Tet(O) bound to the ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.925
0.808
0.787
0.759
0.742
0.739
0.737
0.736
0.726
0.724







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5562.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.721420,0.687883,-0.079814 178.869932 center 0,0,0 model #1
move 181.488033,184.647341,184.416615 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!