Pairwise fitting pdb-4v5m on emdb-3079 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-3079 by gmfit(PID:1240001).





RANK[1] Corr.Coeff:0.876

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-3079)

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Single-particle cryo-EM of co-translational folded adr1 domain inside the E. coli ribosome exit tunnel. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.876
0.747
0.737
0.730
0.681
0.679
0.662
0.662
0.661
0.659







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3079.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.470422,-0.846756,0.248412 9.892941 center 0,0,0 model #1
move 249.180382,255.181368,256.974107 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!