Pairwise fitting pdb-4v5m on emdb-1854 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-1854 by gmfit(PID:15141).





RANK[1] Corr.Coeff:0.918

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-1854)

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An insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.918
0.810
0.775
0.735
0.731
0.724
0.723
0.720
0.712
0.711







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1854.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.745598,0.663225,-0.064932 175.076047 center 0,0,0 model #1
move 0.621102,3.211886,1.680569 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1854)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(15141)]