Pairwise fitting pdb-4v5m on emdb-1725 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-1725 by gmfit(PID:3974683).





RANK[1] Corr.Coeff:0.877

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-1725)

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Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.877
0.753
0.737
0.719
0.702
0.699
0.683
0.676
0.676
0.675







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1725.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.755845,-0.149234,0.637517 130.908808 center 0,0,0 model #1
move 179.991018,180.665336,187.009581 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!