Pairwise fitting pdb-4v5m on emdb-1541 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-1541 by gmfit(PID:4012868).





RANK[1] Corr.Coeff:0.922

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-1541)

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Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.922
0.801
0.774
0.774
0.757
0.748
0.730
0.718
0.714
0.710







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1541.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.735639,0.674425,-0.063130 176.888188 center 0,0,0 model #1
move 185.907833,185.339962,188.264926 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!