Pairwise fitting pdb-4v4v on pdb-4v78 by gmfit



Pairwise fitting of target pdb-4v4v on reference pdb-4v78 by gmfit(PID:4060452).

RANK[1] Corr.Coeff:0.935 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(pdb-4v78)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.935 0.769 0.765 0.762 0.762 0.749 0.748 0.747 0.741 0.734

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v78"(PDB-format) or "4v78"(mmCIF-format), and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.786166,-0.206899,0.582353 130.768778 center 0,0,0 model #1
    move 179.267174,189.525524,179.149922 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v78)] [Download the target GMM(pdb 4v4v)] [Download gmfit result file(4060452)]