Pairwise fitting pdb-4v4v on pdb-4v4w by gmfit



Pairwise fitting of target pdb-4v4v on reference pdb-4v4w by gmfit(PID:4113810).

RANK[1] Corr.Coeff:0.965 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(pdb-4v4w)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.965 0.765 0.764 0.763 0.760 0.759 0.750 0.736 0.733 0.732

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v4w"(PDB-format) or "4v4w"(mmCIF-format), and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.017834,0.504654,-0.863137 1.852250 center 0,0,0 model #1
    move 0.316480,0.251653,-0.357179 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v4w)] [Download the target GMM(pdb 4v4v)] [Download gmfit result file(4113810)]