Pairwise fitting pdb-4v4v on pdb-4v4w by gmfit










Pairwise fitting of target pdb-4v4v on reference pdb-4v4w by gmfit(PID:914225).





RANK[1] Corr.Coeff:0.965

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(pdb-4v4w)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.965
0.765
0.764
0.763
0.760
0.759
0.750
0.736
0.733
0.732







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v4w"(PDB-format) or 
 "4v4w"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.017834,0.504654,-0.863137 1.852250 center 0,0,0 model #1
move 0.316480,0.251653,-0.357179 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v4w)]

[Download the target GMM(pdb 4v4v)]

[Download gmfit result file(914225)]