Pairwise fitting pdb-4v4v on emdb-5943 by gmfit



Pairwise fitting of target pdb-4v4v on reference emdb-5943 by gmfit(PID:1188769).

RANK[1] Corr.Coeff:0.884 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(emdb-5943)
display:
color:
Cryo-EM Map of a yeast ribosome bound to the TSV IRES (Class I) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.884 0.851 0.791 0.777 0.769 0.764 0.757 0.756 0.753 0.725

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5943.map.gz", and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.006162,-0.041766,0.999108 91.923207 center 0,0,0 model #1
    move 220.897537,229.272768,223.471400 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!