Pairwise fitting pdb-4v4v on emdb-5363 by gmfit



Pairwise fitting of target pdb-4v4v on reference emdb-5363 by gmfit(PID:1262977).

RANK[1] Corr.Coeff:0.905 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(emdb-5363)
display:
color:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 5 (rotated 70S ribosome with A-site and P-site tRNAs) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.905 0.769 0.749 0.747 0.747 0.738 0.726 0.720 0.716 0.704

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5363.map.gz", and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.037669,-0.992537,0.115978 5.514149 center 0,0,0 model #1
    move 12.074046,3.153625,3.854066 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!