Pairwise fitting pdb-4v4v on emdb-5361 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-5361 by gmfit(PID:3536844).





RANK[1] Corr.Coeff:0.915

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-5361)

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New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 2 (unrotated 70S ribosome with A-site and P-site tRNAs) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.915
0.889
0.757
0.735
0.730
0.726
0.719
0.704
0.702
0.701







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5361.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.431023,-0.896840,-0.099483 3.181744 center 0,0,0 model #1
move 12.527635,2.455867,3.825925 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!