Pairwise fitting pdb-4v4v on emdb-5141 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-5141 by gmfit(PID:4098297).





RANK[1] Corr.Coeff:0.797

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-5141)

display:



color:


Ab initio reconstruction of the E. coli 70S ribosome complex (70S-fMet-tRNAfMet-Phe-tRNAPhe-EF-Tu-GDP-kirromycin) via the asymmetric random-model method. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.797
0.656
0.654
0.651
0.647
0.643
0.642
0.631
0.625
0.623







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5141.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.705833,0.708364,-0.004467 177.202773 center 0,0,0 model #1
move 0.783482,15.245617,2.231907 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!