Pairwise fitting pdb-4v4v on emdb-2422 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-2422 by gmfit(PID:3064868).





RANK[1] Corr.Coeff:0.794

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-2422)

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Molecular architecture of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.794
0.771
0.769
0.752
0.743
0.742
0.733
0.725
0.723
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2422.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.771111,-0.548244,-0.323755 142.207899 center 0,0,0 model #1
move 14.694020,-17.361715,-4.055336 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!