Pairwise fitting pdb-4v4v on emdb-2008 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-2008 by gmfit(PID:3712036).





RANK[1] Corr.Coeff:0.800

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-2008)

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3D reconstruction of a translating yeast 80S ribosome in complex with Dom34p and Rli1p [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.800
0.776
0.737
0.723
0.719
0.715
0.713
0.712
0.710
0.694







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2008.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.644789,0.714986,0.270263 138.008407 center 0,0,0 model #1
move 0.091833,14.776551,-6.105010 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!