Pairwise fitting pdb-4v4v on emdb-1669 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1669 by gmfit(PID:42278).





RANK[1] Corr.Coeff:0.770

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1669)

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Cryo-EM structures of the idle yeast Ssh1 complex bound to the yeast 80S ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.770
0.737
0.736
0.718
0.713
0.706
0.702
0.700
0.699
0.698







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1669.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.630432,0.715143,0.301870 147.387411 center 0,0,0 model #1
move -3.710719,21.031093,-1.554086 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!