Pairwise fitting pdb-4v4v on emdb-1311 by gmfit



Pairwise fitting of target pdb-4v4v on reference emdb-1311 by gmfit(PID:1139642).

RANK[1] Corr.Coeff:0.867 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(emdb-1311)
display:
color:
Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.867 0.806 0.729 0.718 0.705 0.701 0.693 0.684 0.674 0.667

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1311.map.gz", and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.247076,-0.687015,0.683348 1.366750 center 0,0,0 model #1
    move 19.487078,2.590973,9.258037 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!