Pairwise fitting pdb-4v4v on emdb-1056 by gmfit



Pairwise fitting of target pdb-4v4v on reference emdb-1056 by gmfit(PID:1143724).

RANK[1] Corr.Coeff:0.904 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(emdb-1056)
display:
color:
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.904 0.736 0.733 0.731 0.727 0.718 0.717 0.712 0.698 0.695

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1056.map.gz", and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.203324,-0.966830,0.154592 3.064484 center 0,0,0 model #1
    move 13.480554,1.482017,2.093744 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!