Pairwise fitting pdb-4v47 on emdb-5976 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-5976 by gmfit(PID:3240134).





RANK[1] Corr.Coeff:0.887

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-5976)

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Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - 1 tRNA in rotated conformation) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.887
0.799
0.775
0.770
0.756
0.737
0.733
0.729
0.722
0.696







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5976.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.011386,-0.021948,0.999694 89.598984 center 0,0,0 model #1
move 194.543082,189.549808,194.423872 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!