Pairwise fitting pdb-4v47 on emdb-5692 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-5692 by gmfit(PID:2457729).





RANK[1] Corr.Coeff:0.900

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-5692)

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Structure of the SecY protein translocation channel in action [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.900
0.712
0.709
0.707
0.682
0.662
0.662
0.655
0.652
0.652







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5692.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.741389,-0.129754,-0.658412 124.552629 center 0,0,0 model #1
move -1.766118,1.886761,-5.209722 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!