Pairwise fitting pdb-4v47 on emdb-5141 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-5141 by gmfit(PID:4060571).





RANK[1] Corr.Coeff:0.785

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-5141)

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Ab initio reconstruction of the E. coli 70S ribosome complex (70S-fMet-tRNAfMet-Phe-tRNAPhe-EF-Tu-GDP-kirromycin) via the asymmetric random-model method. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.785
0.659
0.647
0.645
0.638
0.634
0.633
0.621
0.617
0.615







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5141.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.699401,0.714598,-0.013670 177.203360 center 0,0,0 model #1
move -1.055012,3.340856,3.644872 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!