Pairwise fitting pdb-3j0f on pdb-3j6r by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-3j6r by gmfit(PID:415981).





RANK[1] Corr.Coeff:0.478

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-3j6r)

display:



color:


b'ELECTRON CRYO-MICROSCOPY OF HUMAN PAPILLOMAVIRUS TYPE 16 CAPSID       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.478
0.407
0.395
0.352
0.350
0.340
0.338
0.331
0.327
0.289







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j6r"(PDB-format) or 
 "3j6r"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.114041,0.262777,0.958093 94.940806 center 0,0,0 model #1
move -32.178952,-81.218115,2.657703 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!