Pairwise fitting pdb-3j0f on pdb-2xyy by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-2xyy by gmfit(PID:3862678).





RANK[1] Corr.Coeff:0.388

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-2xyy)

display:



color:


b'DE NOVO MODEL OF BACTERIOPHAGE P22 PROCAPSID COAT PROTEIN             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.388
0.351
0.335
0.334
0.308
0.288
0.284
0.283
0.283
0.281







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xyy"(PDB-format) or 
 "2xyy"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.009989,-0.257679,0.966179 125.609269 center 0,0,0 model #1
move 128.970126,-2.932437,23.500887 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!