Pairwise fitting pdb-3j0f on pdb-2xd8 by gmfit



Pairwise fitting of target pdb-3j0f on reference pdb-2xd8 by gmfit(PID:1402830).

RANK[1] Corr.Coeff:0.402 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(pdb-2xd8)
display:
color:
b'CAPSID STRUCTURE OF THE INFECTIOUS PROCHLOROCOCCUS CYANOPHAGE P-SSP7 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.402 0.310 0.305 0.298 0.273 0.273 0.268 0.267 0.261 0.260

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2xd8"(PDB-format) or "2xd8"(mmCIF-format), and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.918665,-0.310090,-0.244742 177.755792 center 0,0,0 model #1
    move 29.814392,22.308166,-14.403525 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!