Pairwise fitting pdb-3j0f on pdb-1ld4 by gmfit










Pairwise fitting of target pdb-3j0f on reference pdb-1ld4 by gmfit(PID:3485686).





RANK[1] Corr.Coeff:0.597

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(pdb-1ld4)

display:



color:


b'PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS                 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.597
0.339
0.275
0.267
0.262
0.256
0.218
0.208
0.199
0.191







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1ld4"(PDB-format) or 
 "1ld4"(mmCIF-format), and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.236670,-0.225886,-0.944967 157.291674 center 0,0,0 model #1
move -6.296343,-3.305140,0.527071 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!