Pairwise fitting pdb-3j0f on emdb-5792 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-5792 by gmfit(PID:4113358).





RANK[1] Corr.Coeff:0.460

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-5792)

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Cryo-electron microscopy of an immature 50S ribosomal subunit (45S particle) from Bacillus subtilis depleted of RbgA (YlqF), conformation 4 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.460
0.430
0.399
0.394
0.393
0.392
0.381
0.346
0.346
0.334







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5792.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.266507,0.766715,-0.584056 64.045166 center 0,0,0 model #1
move -57.942816,243.698924,54.539706 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!