Pairwise fitting pdb-3j0f on emdb-5791 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-5791 by gmfit(PID:1218467).





RANK[1] Corr.Coeff:0.473

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

display:



color:



b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-5791)

display:



color:


Cryo-electron microscopy of an immature 50S ribosomal subunit (45S particle) from Bacillus subtilis depleted of RbgA (YlqF), conformation 3 [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.473
0.409
0.405
0.403
0.384
0.380
0.373
0.351
0.345
0.342







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5791.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.359099,-0.108487,-0.926973 151.801764 center 0,0,0 model #1
move 343.189497,225.809840,-11.397517 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!