Pairwise fitting pdb-3j0f on emdb-5578 by gmfit



Pairwise fitting of target pdb-3j0f on reference emdb-5578 by gmfit(PID:1068412).

RANK[1] Corr.Coeff:0.085 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(emdb-5578)
display:
color:
Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab 9.8B [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.085 0.008 0.008 0.007 0.007 0.007 0.006 0.006 0.006 0.006

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5578.map.gz", and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.946702,-0.315011,0.067261 126.706278 center 0,0,0 model #1
    move -108.119327,155.860223,265.717055 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!