Pairwise fitting pdb-3j0f on emdb-2552 by gmfit










Pairwise fitting of target pdb-3j0f on reference emdb-2552 by gmfit(PID:1475536).





RANK[1] Corr.Coeff:0.441

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3j0f)

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b'SINDBIS VIRION                                                        ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3j0f)]







REFERENCE(emdb-2552)

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Electron cryo-microscopy of TcdA1 in pore state. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.441
0.431
0.428
0.421
0.402
0.395
0.384
0.383
0.376
0.363







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2552.map.gz", and read it.

  2.  Download the Target molecule "3j0f"(PDB-format) or
  "3j0f"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.758581,0.574951,0.306573 85.185358 center 0,0,0 model #1
move -79.007362,-250.882668,35.583417 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!