Pairwise fitting pdb-3j0f on emdb-2307 by gmfit



Pairwise fitting of target pdb-3j0f on reference emdb-2307 by gmfit(PID:1474744).

RANK[1] Corr.Coeff:0.428 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(emdb-2307)
display:
color:
Structural visualization of key steps in human transcription initiation [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.428 0.363 0.356 0.355 0.350 0.346 0.344 0.321 0.316 0.312

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2307.map.gz", and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.532652,-0.666964,-0.520999 130.319777 center 0,0,0 model #1
    move 177.795448,-54.286613,178.825446 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!