Pairwise fitting pdb-3izd on pdb-2w4v by gmfit



Pairwise fitting of target pdb-3izd on reference pdb-2w4v by gmfit(PID:1389821).

RANK[1] Corr.Coeff:0.412 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(pdb-2w4v)
display:
color:
b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.412 0.341 0.316 0.292 0.290 0.131 0.124 0.109 0.102 0.083

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2w4v"(PDB-format) or "2w4v"(mmCIF-format), and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.263100,0.783735,-0.562616 111.648194 center 0,0,0 model #1
    move -99.903485,83.208225,45.500652 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!