Pairwise fitting pdb-3izd on emdb-5959 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5959 by gmfit(PID:3675541).





RANK[1] Corr.Coeff:0.444

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5959)

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Single particle EM reveals plasticity of interactions between the adenovirus penton base and integrin alphaV-beta3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.444
0.320
0.293
0.251
0.219
0.192
0.185
0.103
0.074
0.061







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5959.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.044440,-0.873804,-0.484243 160.672637 center 0,0,0 model #1
move 95.835220,-24.563708,-44.386066 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!