Pairwise fitting pdb-3izd on emdb-5891 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-5891 by gmfit(PID:1142048).

RANK[1] Corr.Coeff:0.282 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-5891)
display:
color:
Cryo-EM structure of MAVSdeltaProTM filament [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.282 0.254 0.248 0.203 0.191 0.182 0.165 0.154 0.106 0.103

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5891.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.627332,0.126846,-0.768352 106.000634 center 0,0,0 model #1
    move 18.185875,182.042760,120.303829 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!