Pairwise fitting pdb-3izd on emdb-5352 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5352 by gmfit(PID:4048468).





RANK[1] Corr.Coeff:0.315

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5352)

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color:


Structure of a type III secretion needle [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.315
0.302
0.297
0.294
0.207
0.205
0.205
0.201
0.164
0.143







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5352.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.615796,-0.738240,-0.275314 122.473468 center 0,0,0 model #1
move -34.765393,-89.440436,-60.358379 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!