Pairwise fitting pdb-3izd on emdb-5294 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-5294 by gmfit(PID:1569940).

RANK[1] Corr.Coeff:0.404 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-5294)
display:
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3D reconstruction of frozen hydrated HIV-1 integrase dimer in complex with two Fabs. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.404 0.396 0.309 0.299 0.250 0.250 0.152 0.127 0.126 0.124

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5294.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.487204,0.854126,0.181938 154.983426 center 0,0,0 model #1
    move 73.678332,26.714186,76.283831 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!