Pairwise fitting pdb-3izd on emdb-2281 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2281 by gmfit(PID:2224612).





RANK[1] Corr.Coeff:0.285

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2281)

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Three-dimensional reconstruction of intact human integrin alphaIIbbeta3 in a phospholipid bilayer nanodisc [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.285
0.218
0.204
0.192
0.186
0.182
0.178
0.169
0.129
0.126







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2281.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.513183,-0.239500,0.824186 96.210930 center 0,0,0 model #1
move 221.699434,113.249565,236.953973 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!